This method allow your to time phase your expenses. Pay some $$$ now (for the controller card that can be used for both SAS and SATA drives), and then some other $$$ later for drives (as your finances allow).
Yeah, the PCI / PCIX can be confusing.
On Windows, the booting is not from a floppy, just in the process of the boot, you tell the O/S that you have a driver disk that needs to be loaded.
HTH, and if you see no value in this - feel free to ignore any and all of it. I just thought that if you were building up a gonzo system, you would be interested in the fastest drives you could get.
Jim